miRBase entry: sme-mir-10a

Stem-loop sme-mir-10a


Accession
MI0010763
Description
Schmidtea mediterranea sme-mir-10a precursor miRNA

Literature search
1 open access papers mention sme-mir-10a
(1 sentences)

Sequence

uaauuuguuuccuugauauaAACCCUGUAGAUCCGAGUUAGAUgguuuuucCAAUUCGAAUCUCGGGGAAUUauauuaaugagauuaucuucu
......(((((.(((((((((.(((((.((((.((((((.((.......)).)))))).)))))))))..))))))))).)))))........

Structure
--uaauuu     c         -A     U    C      A  Ug 
        guuuc uugauauaA  CCCUG AGAU CGAGUU GA  g
        ||||| |||||||||  ||||| |||| |||||| ||  u
        uagag aauuauaUU  GGGGC UCUA GCUUAA cu  u
ucuucuau     u         AA     -    A      C  uu 


Annotation confidence Not enough data
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Genome context
Contig3771: 5918-6010 [-]

Database links

Mature sme-miR-10a-5p

Accession MIMAT0011223
Description Schmidtea mediterranea sme-miR-10a-5p mature miRNA
Sequence 21 - AACCCUGUAGAUCCGAGUUAGAU - 43
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-10a-3p

Accession MIMAT0012130
Description Schmidtea mediterranea sme-miR-10a-3p mature miRNA
Sequence 52 - CAAUUCGAAUCUCGGGGAAUU - 72
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491