Stem-loop sme-mir-753b

Accession

MI0010766

Description

Schmidtea mediterranea sme-mir-753b precursor miRNA

Gene family

MIPF0000752; mir-753

Sequence

uuuuuauaaagcauauuuuaAGGCUUGAAUUGUGAUCUCAuauauuuaUGAGAUCAUUGUUCAAGCUCUUAaauaauacuuuucaucauug
.......((((.((..((((((((((((((.(((((((((((....))))))))))).)))))))).))))))..)).)))).........

Structure

--uuuuuau    c  au      -        U           u 
         aaag au  uuuaAG GCUUGAAU GUGAUCUCAua a
         |||| ||  |||||| |||||||| |||||||||||  
         uuuc ua  aaAUUC CGAACUUG UACUAGAGUau u
guuacuacu    a  au      U        U           u 

Annotation confidence Not enough data

Genome context

Contig7065: 2454-2544 [+]

Mature sme-miR-753b-5p

• Accession: MIMAT0011395
• Description: Schmidtea mediterranea sme-miR-753b-5p mature miRNA
• Sequence: 21 - AGGCUUGAAUUGUGAUCUCA - 40
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-753b-3p

• Accession: MIMAT0011226
• Description: Schmidtea mediterranea sme-miR-753b-3p mature miRNA
• Sequence: 49 - UGAGAUCAUUGUUCAAGCUCUUA - 71
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491