miRBase entry: sme-mir-2153

Stem-loop sme-mir-2153


Accession
MI0010774
Description
Schmidtea mediterranea sme-mir-2153 precursor miRNA


Sequence

uaaauuacggauuuugauuaggUAGGCAUAGUCUGUUGGUUACUucuaugaaauugaauuugaucaauaaaucacccuugaccauggacgcgacccuaccuuuuauugaaugaaauauuucg
............((((((.(((((((....((((((.(((((......(((.(((((......)))))...)))....))))))))))).....)))))))...))))))............

Structure
uaaauuacggau      --u       -CAUA      U     CUucua   --a     au 
            uuugau   aggUAGG     GUCUGU GGUUA      uga   auuga  u
            ||||||   |||||||     |||||| |||||      |||   |||||   
            aaguua   uccaucc     caggua ccagu      acu   uaacu  u
gcuuuauaaagu      uuu       cagcg      -     --uccc   aaa     ag 


Annotation confidence Not enough data
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Genome context
Contig2809: 40729-40850 [+]

Database links

Mature sme-miR-2153

Accession MIMAT0011234
Description Schmidtea mediterranea sme-miR-2153 mature miRNA
Sequence 23 - UAGGCAUAGUCUGUUGGUUACU - 44
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551