miRBase entry: sme-mir-754b-1

Stem-loop sme-mir-754b-1


Accession
MI0010776
Description
Schmidtea mediterranea sme-mir-754b-1 precursor miRNA
Gene family
MIPF0000749; mir-754


Sequence

guuuaucauccacccagcauGUUGCUUGGGGGUAUUACUAuauuuauuaauauAAUUUUAUCAUCAAGCAAUAUcagaggugaaauauucaacu
..........(((((.(.(((((((((((.((((..(.((((((....)))))).)..)))).)))))))))))).).))))............

Structure
--guuuaucauc    - a c           G    UU C      u 
            cacc c g auGUUGCUUGG GGUA  A UAuauu a
            |||| | | ||||||||||| ||||  | ||||||  
            gugg g c UAUAACGAACU CUAU  U Auauaa u
ucaacuuauaaa    a a -           A    UU A      u 


Annotation confidence Not enough data
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Genome context
Contig23853: 3941-4034 [+]

Database links

Mature sme-miR-754b-5p

Accession MIMAT0011236
Description Schmidtea mediterranea sme-miR-754b-5p mature miRNA
Sequence 21 - GUUGCUUGGGGGUAUUACUA - 40
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-754b-3p

Accession MIMAT0011415
Description Schmidtea mediterranea sme-miR-754b-3p mature miRNA
Sequence 54 - AAUUUUAUCAUCAAGCAAUAU - 74
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491