miRBase entry: sme-mir-36b

Stem-loop sme-mir-36b


Accession
MI0010782
Description
Schmidtea mediterranea sme-mir-36b precursor miRNA


Sequence

uuuuuuaacagucuaacucuGGAUUGAUGUUAUUCGGUAUGAUCuagaauaaaaauuaUCACCGGGUAGACAUUAAUCAUGcaguuagagucuguaguccu
.......((((((((((((..((((((((((((((((((((((...........))))).))))))).))))))))))..).)))))))..))))......

Structure
uuuuuua    --       - uG          -       -     Cuag 
       acag  ucuaacu c  GAUUGAUGUU AUUCGGU AUGAU    a
       ||||  ||||||| |  |||||||||| ||||||| |||||    a
       uguc  agauuga G  CUAAUUACAG UGGGCCA Uauua    u
-uccuga    ug       c UA          A       C     aaaa 


Annotation confidence Not enough data
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Genome context
Contig20276: 572-672 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-36b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-36b-5p

Accession MIMAT0012141
Description Schmidtea mediterranea sme-miR-36b-5p mature miRNA
Sequence 21 - GGAUUGAUGUUAUUCGGUAUGAUC - 44
Evidence experimental
Illumina [1-2]

Mature sme-miR-36b-3p

Accession MIMAT0011242
Description Schmidtea mediterranea sme-miR-36b-3p mature miRNA
Sequence 59 - UCACCGGGUAGACAUUAAUCAUG - 81
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491