miRBase entry: sme-mir-216

Stem-loop sme-mir-216


Accession
MI0010785
Description
Schmidtea mediterranea sme-mir-216 precursor miRNA

Literature search
1 open access papers mention sme-mir-216
(2 sentences)

Sequence

ccugucaugauuuagcaagCAAUCUCAGCCUGUUAAUAGGAGUUuggaaauguuuaaauaCUCCUAUAACGUCUGAUGAUUACuugucaaaucauuuuaccaa
......(((((((.(((((.((((((((..(((((.((((((((((((....)))))..)))))))))))).)))).)))).))))).)))))))........

Structure
--ccuguc       a     C    -    CC     A       --     a 
        augauuu gcaag AAUC UCAG  UGUUA UAGGAGU  Uugga a
        ||||||| ||||| |||| ||||  ||||| |||||||  |||||  
        uacuaaa uguuC UUAG AGUC  GCAAU AUCCUCa  aauuu u
aaccauuu       c     A    U    -U     -       ua     g 


Annotation confidence Not enough data
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Genome context
Contig23847: 7596-7698 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-216
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-216-5p

Accession MIMAT0011245
Description Schmidtea mediterranea sme-miR-216-5p mature miRNA
Sequence 20 - CAAUCUCAGCCUGUUAAUAGGAGUU - 44
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-216-3p

Accession MIMAT0012143
Description Schmidtea mediterranea sme-miR-216-3p mature miRNA
Sequence 61 - CUCCUAUAACGUCUGAUGAUUAC - 83
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491