miRBase entry: sme-mir-9a

Stem-loop sme-mir-9a


Accession
MI0010788
Description
Schmidtea mediterranea sme-mir-9a precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

uuguuuaauugacuauauggUCUUUGGUUUUCUAGCUGUAUGAUuguaaaauuuguugaaauCACACACUAGAUUACCAAUUUCauauauuauaugugaucaucu
.............(((((((...(((((..(((((.(((.(((((.(((......))).))))).))))))))..)))))..)))))))................

Structure
---uuguuuaauugac       UCU     UU     C   A     g   aa 
                uauaugg   UUGGU  UCUAG UGU UGAUu uaa  u
                |||||||   |||||  ||||| ||| ||||| |||   
                auauaCU   AACCA  AGAUC ACA ACuaa guu  u
ucuacuaguguauauu       -UU     UU     -   C     a   gu 


Annotation confidence Not enough data
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Genome context
Contig2917: 42330-42434 [+]

Database links

Mature sme-miR-9a-5p

Accession MIMAT0011248
Description Schmidtea mediterranea sme-miR-9a-5p mature miRNA
Sequence 21 - UCUUUGGUUUUCUAGCUGUAUGAU - 44
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-9a-3p

Accession MIMAT0012146
Description Schmidtea mediterranea sme-miR-9a-3p mature miRNA
Sequence 63 - CACACACUAGAUUACCAAUUUC - 84
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491