Stem-loop sme-mir-7d

Accession

MI0010793

Description

Schmidtea mediterranea sme-mir-7d precursor miRNA

Literature search

1 open access papers mention sme-mir-7d
(1 sentences)

Sequence

aaaaacuauaaaacaauccuUGGAAGACUAGUAAUUUUGUUGUaugcgaaauuuuaucagacauucaguuugagaggauuuaCAACAUUAUUUCUGUUUUCCAAgaaacuuauagucaaucaacg
....(((((((.......((((((((((.((.(((..(((((((.....((((((.((((((.....)))))).)))))))))))))..))).))))))))))))....))))))).........

Structure

-----aaaa       aacaauc          U  U   UU       ugcga      a      a 
         acuauaa       cuUGGAAGAC AG AAU  UGUUGUa     aauuuu ucagac u
         |||||||       |||||||||| || |||  |||||||     |||||| |||||| u
         ugauauu       gAACCUUUUG UC UUA  ACAACau     uuagga aguuug c
gcaacuaac       ---caaa          -  U   UU       -----      g      a 

Annotation confidence Not enough data

Genome context

Contig17271: 6045-6169 [+]

Mature sme-miR-7d-5p

• Accession: MIMAT0011253
• Description: Schmidtea mediterranea sme-miR-7d-5p mature miRNA
• Sequence: 21 - UGGAAGACUAGUAAUUUUGUUGU - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-7d-3p

• Accession: MIMAT0012151
• Description: Schmidtea mediterranea sme-miR-7d-3p mature miRNA
• Sequence: 83 - CAACAUUAUUUCUGUUUUCCAA - 104
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491