miRBase entry: sme-mir-2171

Stem-loop sme-mir-2171


Accession
MI0010814
Description
Schmidtea mediterranea sme-mir-2171 precursor miRNA


Sequence

gaaaacgcaacaguacaaauGUGAUGGAAAUCGCUAUUUCAaaugcucccuugagauuaugcaguggccguucaugauguaaggcauaauagaaa
......((.....((((.(((.(((((..((.((.(((((((........)))))))...)).))..))))))))..))))..))..........

Structure
----gaaaac  aacag    -a   U     AA  C  --U       aug 
          gc     uaca  auG GAUGG  AU GC   AUUUCAa   c
          ||     ||||  ||| |||||  || ||   |||||||    
          cg     augu  uac uugcc  ug cg   uagaguu   u
aaagauaaua  ---ga    ag   -     gg  a  uau       ccc 


Annotation confidence Not enough data
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Genome context
Contig1252: 68837-68931 [-]

Database links

Mature sme-miR-2171

Accession MIMAT0011271
Description Schmidtea mediterranea sme-miR-2171 mature miRNA
Sequence 21 - GUGAUGGAAAUCGCUAUUUCA - 41
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491