miRBase entry: sme-mir-2172

Stem-loop sme-mir-2172


Accession
MI0010815
Description
Schmidtea mediterranea sme-mir-2172 precursor miRNA


Sequence

aauaauuuuccauugauuuGGAAAUAAUGACUAUGCAUGGGACAuuaguagagcuugUACAUGUAUAGUAUUAUUUGCCUgucauuggauuuaucagcga
........((((.((((..((((((((((.(((((((((..(((..(((...)))))).))))))))))))))))).)).)))).))))...........

Structure
---aauaauuu    u    uu  -        A         GG   uu   a 
           ucca ugau  GG AAAUAAUG CUAUGCAUG  ACA  agu  
           |||| ||||  || |||||||| |||||||||  |||  ||| g
           aggu acug  CC UUUAUUAU GAUAUGUAC  Ugu  ucg  
agcgacuauuu    u    -U  G        -         -A   --   a 


Annotation confidence Not enough data
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Genome context
Contig2233: 53297-53396 [+]

Database links

Mature sme-miR-2172-5p

Accession MIMAT0012162
Description Schmidtea mediterranea sme-miR-2172-5p mature miRNA
Sequence 20 - GGAAAUAAUGACUAUGCAUGGGACA - 44
Evidence experimental
Illumina [1-2]

Mature sme-miR-2172-3p

Accession MIMAT0011272
Description Schmidtea mediterranea sme-miR-2172-3p mature miRNA
Sequence 58 - UACAUGUAUAGUAUUAUUUGCCU - 80
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491