Stem-loop sme-mir-96b

Accession

MI0010817

Description

Schmidtea mediterranea sme-mir-96b precursor miRNA

Literature search

1 open access papers mention sme-mir-96b
(1 sentences)

Sequence

uaucaaacaguugucugaaaUUUGGCACUUAAGGAAUCGUCACcaguugcauugauauuguGACAUUUCUAAGUGUCUAUUAUcagagauugguuaucaucu
.......(((((.(((((.....((((((((.(((((.(((((.(((..(...)..))))))))))))))))))))).....))))))))))..........

Structure

---uaucaaa     g     aaUUU        A     C     c   ug a 
          caguu ucuga     GGCACUUA GGAAU GUCAC agu  c  
          ||||| |||||     |||||||| ||||| ||||| |||  | u
          guuag agacU     CUGUGAAU CUUUA CAGug uua  g  
ucuacuauug     -     AUUAU        -     -     -   ua u 

Annotation confidence Not enough data

Genome context

Contig4508: 34953-35054 [-]

Mature sme-miR-96b-5p

• Accession: MIMAT0011273
• Description: Schmidtea mediterranea sme-miR-96b-5p mature miRNA
• Sequence: 21 - UUUGGCACUUAAGGAAUCGUCAC - 43
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature sme-miR-96b-3p

• Accession: MIMAT0012163
• Description: Schmidtea mediterranea sme-miR-96b-3p mature miRNA
• Sequence: 62 - GACAUUUCUAAGUGUCUAUUAU - 83
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491