miRBase entry: sme-mir-96b

Stem-loop sme-mir-96b


Accession
MI0010817
Description
Schmidtea mediterranea sme-mir-96b precursor miRNA

Literature search
1 open access papers mention sme-mir-96b
(1 sentences)

Sequence

uaucaaacaguugucugaaaUUUGGCACUUAAGGAAUCGUCACcaguugcauugauauuguGACAUUUCUAAGUGUCUAUUAUcagagauugguuaucaucu
.......(((((.(((((.....((((((((.(((((.(((((.(((..(...)..))))))))))))))))))))).....))))))))))..........

Structure
---uaucaaa     g     aaUUU        A     C     c   ug a 
          caguu ucuga     GGCACUUA GGAAU GUCAC agu  c  
          ||||| |||||     |||||||| ||||| ||||| |||  | u
          guuag agacU     CUGUGAAU CUUUA CAGug uua  g  
ucuacuauug     -     AUUAU        -     -     -   ua u 


Annotation confidence Not enough data
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Genome context
Contig4508: 34953-35054 [-]

Database links

Mature sme-miR-96b-5p

Accession MIMAT0011273
Description Schmidtea mediterranea sme-miR-96b-5p mature miRNA
Sequence 21 - UUUGGCACUUAAGGAAUCGUCAC - 43
Evidence experimental
454 [1], Illumina [1-2]

Mature sme-miR-96b-3p

Accession MIMAT0012163
Description Schmidtea mediterranea sme-miR-96b-3p mature miRNA
Sequence 62 - GACAUUUCUAAGUGUCUAUUAU - 83
Evidence experimental
454 [1], Illumina [1-2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491