Stem-loop sme-mir-315

Accession

MI0010828

Description

Schmidtea mediterranea sme-mir-315 precursor miRNA

Literature search

1 open access papers mention sme-mir-315
(1 sentences)

Sequence

guugagcgaggcuuauagaaUUUUGAUUGUUGCUCUGAGAGUUaauauaauuucaaugauaACUGUCUAACAACCAUCAAAUUucaaagcgaugcuugucaucg
(..(((((..((((...(((.((((((.((((....((.(((((.(((.......))).))))).))...)))).)))))).))).))))..)))))..)....

Structure

---- uu     ag    aua   U      U    CUCU  G     a   aa 
    g  gagcg  gcuu   gaa UUUGAU GUUG    GA AGUUa uau  u
    |  |||||  ||||   ||| |||||| ||||    || ||||| |||  u
    c  uucgu  cgaa   cuU AAACUA CAAC    CU UCAau gua  u
gcua ug     ag    --a   U      C    -AAU  G     a   ac 

Annotation confidence Low

Genome context

Contig20390: 2450-2553 [+]

Mature sme-miR-315-5p

• Accession: MIMAT0011282
• Description: Schmidtea mediterranea sme-miR-315-5p mature miRNA
• Sequence: 21 - UUUUGAUUGUUGCUCUGAGAGUU - 43
• Evidence: experimental ; Illumina [1-2]

Mature sme-miR-315-3p

• Accession: MIMAT0012167
• Description: Schmidtea mediterranea sme-miR-315-3p mature miRNA
• Sequence: 62 - ACUGUCUAACAACCAUCAAAUU - 83
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491