miRBase entry: sme-mir-2180

Stem-loop sme-mir-2180


Accession
MI0010829
Description
Schmidtea mediterranea sme-mir-2180 precursor miRNA


Sequence

auauauauauauauauaccaacccucaucccauacucauggaaaaaUGGAAUGUGAUAAGGUGCUUgaauuauacuugaaauauug
((((((....))))))..(((((((.(((.(((.(.(((......)))).))).))).))).).)))...................

Structure
-auauauauauauauauac   - -   c   c   a u   gg 
                   caa c ccu auc cau c cau  a
                   ||| | ||| ||| ||| | |||   
                   gUU G GGA UAG GUA G GUa  a
guuauaaaguucauauuaa   C U   A   U   A -   aa 


Annotation confidence Not enough data
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Genome context
Contig24619: 2157-2242 [+]

Database links

Mature sme-miR-2180

Accession MIMAT0011283
Description Schmidtea mediterranea sme-miR-2180 mature miRNA
Sequence 47 - UGGAAUGUGAUAAGGUGCUU - 66
Evidence experimental
454 [1], Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551