Stem-loop dre-mir-1388

Accession

MI0010837

Description

Danio rerio dre-mir-1388 precursor miRNA mir-1388

Gene
family

RF01945; mir-1388

Literature search

3 open access papers mention dre-mir-1388
(6 sentences)

Sequence

6549 reads, 497 reads per million, 10 experiments

ugauggaugagcagugcuuuccAGGACUGUCCAACCUGAGAAUGcuugaguuuuggucaAUCUCAGGUUCGUCAGCCCAUGaaaaacugucucgcucaaagcc
...(((.((((((((..((((..((.(((.(.(((((((((.((((........)).)).))))))))).).))).))..)))).)))).)))).))).....

Structure

--uga   a    -    gc    cA  A   U C         A  -  uga 
     ugg ugag cagu  uuuc  GG CUG C AACCUGAGA UG cu   g
     ||| |||| ||||  ||||  || ||| | ||||||||| || ||    
     acu gcuc guca  aaaG  CC GAC G UUGGACUCU ac gg   u
ccgaa   c    u    -a    UA  C   U C         A  u  uuu 

Annotation confidence High

Genome context

chr23: 13604218-13604320 [+]

Mature dre-miR-1388-5p

• Accession: MIMAT0011292
• Description: Danio rerio dre-miR-1388-5p mature miRNA
• Sequence: 23 - AGGACUGUCCAACCUGAGAAUG - 44
• Evidence: experimental ; 454 [1]

Mature dre-miR-1388-3p

• Accession: MIMAT0011293
• Description: Danio rerio dre-miR-1388-3p mature miRNA
• Sequence: 60 - AUCUCAGGUUCGUCAGCCCAUG - 81
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19397817
   Parallel DNA pyrosequencing unveils new zebrafish microRNAs
   Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA
   BMC Genomics (2009) 10:195