Stem-loop sequence dre-mir-2187

Accession

MI0010839 (change log)

Description

Danio rerio miR-2187 stem-loop

Gene family

MIPF0001770; mir-2187

Literature search

1 open access papers mention dre-mir-2187
(1 sentences)

Stem-loop

   ---uc  a    a          uuua               --uuuag      
5'      ug auug ugauucuggc    auuaguauagccugu       ugauc 
        || |||| ||||||||||    |||||||||||||||       |||| a
3'      ac uaac auuaagaccg    uaaucguaucggaca       acuac 
   ggugu  g    g          uauc               uuucuua      

Deep sequencing

43 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr17: 19900754-19900857 [-]	sense OTTDART00000055388 ; chrm3a-001; intron 2 ENSDART00000154251 ; chrm3a-001; intron 2
KZ115517.1: 190021-190124 [-]	sense OTTDART00000055388 ; chrm3a-001; intron 2 ENSDART00000154251 ; chrm3a-001; intron 2

Database links

• EntrezGene:mir2187
• EntrezGene:mir2187
• RNAcentral:URS000075DE85_7955
• miRBase Tracker:MI0010839

Mature sequence dre-miR-2187-5p

• Accession: MIMAT0011296
• Previous IDs: dre-miR-2187*
• Sequence: 22 - uuaauuaguauagccuguuuua - 43
• Deep sequencing: 36 reads, 4 experiments
• Evidence: experimental; 454 [1]
• Database links:
  • RNAcentral:URS000075B23F_7955

Mature sequence dre-miR-2187-3p

• Accession: MIMAT0011297
• Previous IDs: dre-miR-2187
• Sequence: 61 - uuacaggcuaugcuaaucuaug - 82
• Deep sequencing: 7 reads, 2 experiments
• Evidence: experimental; 454 [1]
• Predicted targets:
  • TargetScanFish:dre-miR-2187

References

1. PMID:19397817 "Parallel DNA pyrosequencing unveils new zebrafish microRNAs" Soares AR, Pereira PM, Santos B, Egas C, Gomes AC, Arrais J, Oliveira JL, Moura GR, Santos MA BMC Genomics. 10:195(2009).