miRBase entry: sbi-MIR156f

Stem-loop sbi-MIR156f


Accession
MI0010860
Description
Sorghum bicolor sbi-MIR156f precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
8 open access papers mention sbi-MIR156f
(22 sentences)

Sequence

gcUGACAGAAGAGAGUGAGCACgcaucggccagacugcaucuauauacggcugcuccuggcgagauauggauggauggaugucuaggcgcagcugcuguugcgugcucacuucucuuucugucagcuc
(((((((((((((((((((((((((.((((.((.((((((((((((...(((......)))...))))))))((((....))))....)))))))))).))))))))))).)))).))))))))))..

Structure
--          -    -           u    c  a    ----------------        acg   gc 
  gcUGACAGAA GAGA GUGAGCACgca cggc ag cugc                aucuauau   gcu  u
  |||||||||| |||| ||||||||||| |||| || ||||                ||||||||   |||   
  cgacugucuu cucu cacucgugcgu gucg uc gacg                uagguaua   cgg  c
cu          u    u           u    -  -    cggaucuguagguagg        gag   uc 


Annotation confidence Not enough data
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Genome context
chr2: 59370555-59370682 [+]

Database links

Mature sbi-miR156f

Accession MIMAT0011320
Description Sorghum bicolor sbi-miR156f mature miRNA
Sequence 3 - UGACAGAAGAGAGUGAGCAC - 22
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556