miRBase entry: sbi-MIR160f

Stem-loop sbi-MIR160f


Accession
MI0010864
Description
Sorghum bicolor sbi-MIR160f precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention sbi-MIR160f
(11 sentences)

Sequence

UGCCUGGCUCCCUGAAUGCCAuccgagagaagcaaugccaucguguccauggcgugccucccgguuggcguugagggagucaugcagguugcuugcauugccucagcagc
(((.(((((((((.(((((((.(((.(((..(((.((((((.......)))))))))))).))).))))))).))))))))).))).((((((.((...))...))))))

Structure
------------------------   C         G       u   a   aa   a      cg 
                        UGC UGGCUCCCU AAUGCCA ccg gag  gca ugccau  u
                        ||| ||||||||| ||||||| ||| |||  ||| ||||||  g
                        acg acugaggga uugcggu ggc cuc  cgu gcggua  u
cgacgacuccguuacguucguugg   u         g       u   c   --   -      cc 


Annotation confidence Not enough data
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Genome context
chr7: 64834676-64834785 [-]

Database links

Mature sbi-miR160f

Accession MIMAT0011324
Description Sorghum bicolor sbi-miR160f mature miRNA
Sequence 1 - UGCCUGGCUCCCUGAAUGCCA - 21
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556