Stem-loop sbi-MIR169j

Accession

MI0010875

Description

Sorghum bicolor sbi-MIR169j precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

4 open access papers mention sbi-MIR169j
(23 sentences)

Sequence

ugUAGCCAAGGAUGACUUGCCGGccgaucgaugccucaucccuguccgggaacgucaugcaugugaugcaaacugugaggccgcaucgucgaucgaccggcagguucuucucuuuggcuacac
((((((((((((.((((((((((.((((((((((((((((((.....)))..((((((....))))))......)))))))......)))))))).))))))))))....)))))))))))).

Structure

-            ---U          c        ------       cccuguccgggaa      g 
 ugUAGCCAAGGA    GACUUGCCGG cgaucgau      gccucau             cgucau c
 ||||||||||||    |||||||||| ||||||||      |||||||             ||||||  
 acaucgguuucu    uuggacggcc gcuagcug      cggagug             guagug a
c            cuuc          a        cuacgc       -------ucaaac      u 

Annotation confidence Not enough data

Genome context

chr4: 58677581-58677703 [+]

Mature sbi-miR169j

• Accession: MIMAT0011335
• Description: Sorghum bicolor sbi-miR169j mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCGG - 23
• Evidence: not_experimental

References

1. PubMed ID: 19189423
   The Sorghum bicolor genome and the diversification of grasses
   "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
   "Nature (2009) 457:551-556