miRBase entry: sbi-MIR171k

Stem-loop sbi-MIR171k


Accession
MI0010884
Description
Sorghum bicolor sbi-MIR171k precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
2 open access papers mention sbi-MIR171k
(2 sentences)

Sequence

cgggauauuggcgcgguucaaucagaaagcuugcgcuccaaagcccaggggcuccacucuuUGAUUGAGCCGUGCCAAUAUCacguc
((.(((((((((((((((((((((((.((...(.(((((........))))).)..)).))))))))))))))))))))))).))..

Structure
--  g                       a  cuu c     aaa 
  cg gauauuggcgcgguucaaucaga ag   g gcucc   g
  || ||||||||||||||||||||||| ||   | |||||    
  gc CUAUAACCGUGCCGAGUUAGUuu uc   c cgggg   c
cu  a                       c  -ac u     acc 


Annotation confidence Not enough data
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Genome context
chr6: 56762480-56762566 [-]

Database links

Mature sbi-miR171k

Accession MIMAT0011344
Description Sorghum bicolor sbi-miR171k mature miRNA
Sequence 62 - UGAUUGAGCCGUGCCAAUAUC - 82
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556