miRBase entry: sbi-MIR390

Stem-loop sbi-MIR390


Accession
MI0010887
Description
Sorghum bicolor sbi-MIR390 precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
3 open access papers mention sbi-MIR390
(17 sentences)

Sequence

ugAAGCUCAGGAGGGAUAGCGCCuaggaaaacacauagauuggagcuagccaugaggagaaagagagagagaggcagcagagcgagaugcaugugaaucucugaaucugcucaucucuuucucuuucucaagguugguucugucuaucaaucugaagcgcuaucuauccugagcuccac
((.(((((((((.(((((((((...(((......((((((.((((((((((.....((((((((((((((((.(.((((((..(((((........)))))....))))))).))))))))))))))))..))))))))))))))))...)))...))))))))).))))))))).)).

Structure
-  A         G         Cua   aaacac      u          augag                g c      --gc     gca 
 ug AGCUCAGGA GGAUAGCGC   gga      auagau ggagcuagcc     gagaaagagagagaga g agcaga    gagau   u
 || ||||||||| |||||||||   |||      |||||| ||||||||||     |||||||||||||||| | ||||||    |||||    
 ac ucgaguccu ucuaucgcg   ucu      uaucug ucuugguugg     cucuuucucuuucucu c ucgucu    cucua   g
c  c         a         aag   ---aac      -          ---aa                a -      aagu     agu 


Annotation confidence Not enough data
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Genome context
chr1: 2876710-2876888 [+]

Database links

Mature sbi-miR390

Accession MIMAT0011347
Description Sorghum bicolor sbi-miR390 mature miRNA
Sequence 3 - AAGCUCAGGAGGGAUAGCGCC - 23
Evidence not_experimental

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716