miRBase entry: sbi-MIR399j

Stem-loop sbi-MIR399j


Accession
MI0010900
Description
Sorghum bicolor sbi-MIR399j precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention sbi-MIR399j
(5 sentences)

Sequence

agugcgguucuccucuggcaugaacgacggcuggagcagcuugccacauggcucggccacggcccuugcuUGCCAAAGGAGAAUUGCCCUGcc
((.(((((((((((.(((((....(((.(((((..((.....(((....)))...))..))))).)))..))))).))))))))))).))...

Structure
---  u           c     ugaa   c     ga  agcuu   a 
   ag gcgguucuccu uggca    cga ggcug  gc     gcc c
   || ||||||||||| |||||    ||| |||||  ||     |||  
   UC CGUUAAGAGGA ACCGU    guu ccggc  cg     cgg a
ccG  C           A     --uc   c     ac  --gcu   u 


Annotation confidence Not enough data
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Genome context
chr4: 9784852-9784944 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR399j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR399j

Accession MIMAT0011360
Description Sorghum bicolor sbi-miR399j mature miRNA
Sequence 71 - UGCCAAAGGAGAAUUGCCCUG - 91
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556