miRBase entry: sbi-MIR821b

Stem-loop sbi-MIR821b


Accession
MI0010926
Description
Sorghum bicolor sbi-MIR821b precursor miRNA
Gene family
MIPF0000350; MIR821


Sequence

uaaaugauuucagaugaaaAAGUUAUGAACAUAAAAGUUGuagaacugauuaagaucuacaccuuuuauuuuggucauuuguucauccaaugaaaugauaguaacauuguucacaaaauuuauauaucucacucuuauaguuuauaaaaccauaugagagagauguaaaauuuaugaacaauguuaguaucacucuaucggaugaaaaaaugaccaaaauaauaguuauagaucuugaugacuucuauaacuuuguuguugauaacuuuuuca
..............((((((((((((.((((..((((((((((((.(.(((((((((((...((.(((((((((((((((.(((((((.(((...(((((.((((((((((((..((((((.((((((((.(((.(((.((((...)))).))).))).)))))))))))))).)))))))))))).)))))...))).))))))).))))))))))))))).))...))))))))))).).))))))))))))..)))).))))))))))))

Structure
uaaaugauuucaga            G    UA            c g           cac  u               g       a   aaa     g            ca      a        a   u   a    a 
              ugaaaAAGUUAU AACA  AAAGUUGuagaa u auuaagaucua   cu uuauuuuggucauuu uucaucc aug   ugaua uaacauuguuca  aaauuu uauaucuc cuc uau guuu  
              |||||||||||| ||||  |||||||||||| | |||||||||||   || ||||||||||||||| ||||||| |||   ||||| ||||||||||||  |||||| |||||||| ||| ||| |||| u
              acuuuuucaaua uugu  uuucaauaucuu a uaguucuagau   ga aauaaaaccaguaaa aaguagg uau   acuau auuguaacaagu  uuuaaa auguagag gag aua caaa  
--------------            g    ug            c g           auu  u               a       c   cuc     g            -a      -        a   u   c    a 


Annotation confidence Not enough data
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Genome context
chr2: 47490066-47490338 [-]

Database links

Mature sbi-miR821b

Accession MIMAT0011386
Description Sorghum bicolor sbi-miR821b mature miRNA
Sequence 20 - AAGUUAUGAACAUAAAAGUUG - 40
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556