miRBase entry: sbi-MIR821c

Stem-loop sbi-MIR821c


Accession
MI0010927
Description
Sorghum bicolor sbi-MIR821c precursor miRNA
Gene family
MIPF0000350; MIR821


Sequence

uaaaugauuuuagcuaaaaAAGUCAUCAACAUAAAAGUUGuagaacuggucaagaucucuaauuuuuauuuuagucauuuuuucauaugacaaaguaauaguaacauuggucauaaauuuuacauaucucugauauaguuucauaaacuauaugagagauauguaaaauuuaugaacaauguuacuauuacuuugccggaugaauaaaugaccagaauaaaaguuguagaucuugaugaguuguacaacuuguauauucaugacuuuaucaccuaaaaucauuua
(((((((((((((.....((((((((.((.(((.((((((((.((((.((((((((((.(((((((((((((.(((((((.(((((.((.(((((((((((((((((((.(((((((((((((((((((((.(((((((((...))))))))).))))))))))))))))))))).))))))))))))))))))).)).))))).))))))).))))))))))))).)))))))))).)))).)))))))).))).)).)))))))).....)))))))))))))

Structure
             cuaaa        C  C   A        g    g          c             a       u     a  a                   g                     g         c 
uaaaugauuuuag     aAAGUCAU AA AUA AAGUUGua aacu gucaagaucu uaauuuuuauuuu gucauuu uucau ug caaaguaauaguaacauug ucauaaauuuuacauaucucu auauaguuu  
|||||||||||||     |||||||| || ||| |||||||| |||| |||||||||| ||||||||||||| ||||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||| ||||||||| a
auuuacuaaaauc     uuucagua uu uau uucaacau uuga uaguucuaga guugaaaauaaga caguaaa aagua gc guuucauuaucauuguaac aguauuuaaaauguauagaga uauaucaaa  
             cacua        c  a   g        g    g          u             c       u     g  c                   a                     g         u 


Annotation confidence Not enough data
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Genome context
chr2: 60192684-60192968 [+]

Database links

Mature sbi-miR821c

Accession MIMAT0011387
Description Sorghum bicolor sbi-miR821c mature miRNA
Sequence 20 - AAGUCAUCAACAUAAAAGUUG - 40
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556