miRBase entry: sbi-MIR821e

Stem-loop sbi-MIR821e


Accession
MI0010929
Description
Sorghum bicolor sbi-MIR821e precursor miRNA
Gene family
MIPF0000350; MIR821


Sequence

aaaAAGUCAUCAAAAUAAAAGUUGuagaacuagucaagaucucccauuuuuauuuuagucauuuuuucauaugacaaaguaauaguaacauuguucauaaauuuuacauaucucugauauaguuuaugaaacuauaugagagauauguaaaauuuaugaacaauguuacuauuacuuugucagaugaauaaaugaucaaaauaaaaguuguagaucuugaugaguuguacaacuuguauauucauggcuuuaucaacuaaaaucauuua
..((((((((.((.(((.((((((((.((((.((((((((((.(.(((((((((((.(((((((.(((((.((((((((((((((((((((((((((((((((((((((((((((.(((((((((...))))))))).)))))))))))))))))))))))))))))))))))))))))))).))))).))))))).))))))))))).).)))))))))).)))).)))))))).))).)).))))))))..................

Structure
----------------aa        C  A   A        g    a          c c           a       u     a                                            g         a 
                  aAAGUCAU AA AUA AAGUUGua aacu gucaagaucu c auuuuuauuuu gucauuu uucau ugacaaaguaauaguaacauuguucauaaauuuuacauaucucu auauaguuu  
                  |||||||| || ||| |||||||| |||| |||||||||| | ||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| u
                  uuucggua uu uau uucaacau uuga uaguucuaga g ugaaaauaaaa uaguaaa aagua acuguuucauuaucauuguaacaaguauuuaaaauguauagaga uauaucaaa  
auuuacuaaaaucaacua        c  a   g        g    g          u u           c       u     g                                            g         g 


Annotation confidence Not enough data
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Genome context
chr9: 44973965-44974233 [-]

Database links

Mature sbi-miR821e

Accession MIMAT0011389
Description Sorghum bicolor sbi-miR821e mature miRNA
Sequence 4 - AAGUCAUCAAAAUAAAAGUUG - 24
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556