miRBase entry: sbi-MIR1432

Stem-loop sbi-MIR1432


Accession
MI0010930
Description
Sorghum bicolor sbi-MIR1432 precursor miRNA
Gene family
MIPF0001063; MIR1432

Literature search
1 open access papers mention sbi-MIR1432
(12 sentences)

Sequence

gauaggacauaggaggcgagagggacgacgagccguugguuugugggugugcguccuaugCUCAGGAGAGAUGACACCGACgucggacggaccggucgauccgcgccgugucuguccguccgaagugggugucaucucgccugaagcauaggacuuaccagcccaguacaucucccuguuuuca
...........((((((...(((((..(((((((...)))))))(((((((.((((((((((((((.(((((((((((.((.(((((((((((((.((.....))))).....)))))))))).)).))))))))))).)))).)))))))))).)))..))))........))))))))))).

Structure
gauaggacaua      gag     cgacgagccguugguuugu    --   c          -    A           G  g          -----   u  a 
           ggaggc   aggga                   gggu  gug guccuaugCU CAGG GAGAUGACACC AC ucggacggac     cgg cg u
           ||||||   |||||                   ||||  ||| |||||||||| |||| ||||||||||| || ||||||||||     ||| || c
           cuuuug   ucccu                   cccg  cau caggauacga gucc cucuacugugg ug agccugccug     gcc gc c
----------a      ---     -----------cuacauga    ac   u          a    g           g  a          ucugu   -  g 


Annotation confidence Not enough data
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Genome context
chr2: 71616755-71616938 [-]

Database links

Mature sbi-miR1432

Accession MIMAT0011390
Description Sorghum bicolor sbi-miR1432 mature miRNA
Sequence 61 - CUCAGGAGAGAUGACACCGAC - 81
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556