miRBase entry: sbi-MIR1435a

Stem-loop sbi-MIR1435a


Accession
MI0010931
Description
Sorghum bicolor sbi-MIR1435a precursor miRNA
Gene family
MIPF0000760; MIR1435


Sequence

guuguauuaaugcacccaucauauuauuuacucuguuccaaauuauagguuaauuuagcuuUUUCUUAAGUCAAACUUUUCuaauuuugacaauuuuagaaaauauauuaacaucuacaaguucaaauaaaugcaauaccaacuaccaaacauauuucauggaggauuuaaugaaacaaacuugauguuguagauguugaugcaucuuucuguaaacuuggucaaagauaaguuugacuuaggaaaaacuaaagugaccucucauucggaaccuauggaguacuuca
..((((....))))..............(((((((((((.(((...((((((.(((((.(((((((((((((((((((.(((....(((((..(((((((((((.(((((((((((((((..((((.......((.((....((.(((...........)))))....)).))........))))..))))))))))))))).)).)))))).)))....)))))))).)))))))))))))))))))))))).))))))...))).)))))....)))))).....

Structure
guuguauuaaugcacccaucauauuauu      ----     a   uau      a     c                   U   aauu     --aa   -      -  a               gu    -auaaaug  a  ccaa  a   aaca 
                            uacucu    guucc aau   agguua uuuag uuUUUCUUAAGUCAAACUU UCu    uugac    uuu uagaaa au uauuaacaucuacaa  ucaa        ca ua    cu cca    u
                            ||||||    ||||| |||   |||||| ||||| ||||||||||||||||||| |||    |||||    ||| |||||| || |||||||||||||||  ||||        || ||    || |||    a
                            augagg    caagg uua   uccagu aaauc aaaaaggauucaguuugaa aga    aacug    aaa gucuuu ua guaguuguagauguu  aguu        gu au    ga ggu    u
-----------------------acuuc      uauc     c   cuc      g     -                   u   ----     guuc   u      c  c               gu    caaacaaa  a  uuag  -   acuu 


Annotation confidence Not enough data
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Genome context
chr2: 60538637-60538923 [+]

Database links

Mature sbi-miR1435a

Accession MIMAT0011391
Description Sorghum bicolor sbi-miR1435a mature miRNA
Sequence 62 - UUUCUUAAGUCAAACUUUUC - 81
Evidence not_experimental

References

  1. PubMed ID: 19189423
    The Sorghum bicolor genome and the diversification of grasses
    "Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare"
    "Nature (2009) 457:551-556