miRBase entry: sme-mir-124c-2

Stem-loop sme-mir-124c-2


Accession
MI0010936
Description
Schmidtea mediterranea sme-mir-124c-2 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
1 open access papers mention sme-mir-124c-2
(6 sentences)

Sequence

ccauuauauucaugaaGCAUUAACCCUGUUGUCUUAGAUaguuuauuacaaaacauuUAAGGCACGCGGUGAAUGCCAugugaaaugg
(((((.....((((..(((((.(((.(((.(((((((((.((((......)))))))))))))))).))).)))))))))...)))))

Structure
     auauu    aa     A   C   U         a    au 
ccauu     caug  GCAUU ACC UGU GUCUUAGAU guuu  u
|||||     ||||  ||||| ||| ||| ||||||||| ||||   
gguaa     guAC  CGUAA UGG GCA CGGAAUuua caaa  a
     --agu    --     G   C   -         -    ac 


Annotation confidence Not enough data
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Genome context
Contig8879: 8243-8330 [+]

Database links

Mature sme-miR-124c-3p

Accession MIMAT0003995
Description Schmidtea mediterranea sme-miR-124c-3p mature miRNA
Sequence 58 - UAAGGCACGCGGUGAAUGCCA - 78
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-124c-2-5p

Accession MIMAT0013778
Description Schmidtea mediterranea sme-miR-124c-2-5p mature miRNA
Sequence 17 - GCAUUAACCCUGUUGUCUUAGAU - 39
Evidence experimental
Illumina [1-2], 454 [2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491