miRBase entry: sme-mir-2e

Stem-loop sme-mir-2e


Accession
MI0010938
Description
Schmidtea mediterranea sme-mir-2e precursor miRNA


Sequence

uauaggucagaugAAACCUAGUUGGUUGCGAUAUGuugccauucaauaccaUAUCACAGCUUGCUCUAGGUUUAaucucgacuuauuuuucucauc
.(((((((((((.((((((((..(((((.((((((.((........)).)))))).)))))....)))))))).)))).)))))))..........

Structure
---------u       -    g        --UU     C      u  cca 
          auagguc agau AAACCUAG    GGUUG GAUAUG ug   u
          ||||||| |||| ||||||||    ||||| |||||| ||    
          uauucag ucua UUUGGAUC    UCGAC CUAUac au   u
cuacucuuuu       c    A        UCGU     A      c  aac 


Annotation confidence Not enough data
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Genome context
Contig272: 56381-56476 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from sme-mir-2e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-2e-5p

Accession MIMAT0011400
Description Schmidtea mediterranea sme-miR-2e-5p mature miRNA
Sequence 14 - AAACCUAGUUGGUUGCGAUAUG - 35
Evidence experimental
Illumina [1]

Mature sme-miR-2e-3p

Accession MIMAT0011401
Description Schmidtea mediterranea sme-miR-2e-3p mature miRNA
Sequence 52 - UAUCACAGCUUGCUCUAGGUUUA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491