Stem-loop sme-mir-2206

Accession

MI0010939

Description

Schmidtea mediterranea sme-mir-2206 precursor miRNA

Sequence

cAGGGCAGGCAUAGCUAAGUGguuacuucucacuggaaaauggauuucuaaucauuugACCACUGGUGCGAUCCUGCCuuuuac
.((((((((.((.((..((((((((........((((((.....))))))......))))))))...)).))))))))))....

Structure

---c        C  A  -UA        cuucucac      a 
    AGGGCAGG AU GC   AGUGguua        uggaaa u
    |||||||| || ||   ||||||||        |||||| g
    uuCCGUCC UA CG   UCACCAgu        aucuuu g
cauu        -  G  UGG        --uuacua      a 

Annotation confidence Not enough data

Genome context

Contig9421: 12895-12978 [-]

Mature sme-miR-2206-5p

• Accession: MIMAT0011402
• Description: Schmidtea mediterranea sme-miR-2206-5p mature miRNA
• Sequence: 2 - AGGGCAGGCAUAGCUAAGUG - 21
• Evidence: experimental ; Illumina [1]

Mature sme-miR-2206-3p

• Accession: MIMAT0011403
• Description: Schmidtea mediterranea sme-miR-2206-3p mature miRNA
• Sequence: 59 - ACCACUGGUGCGAUCCUGCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491