miRBase entry: sme-mir-2154-2

Stem-loop sme-mir-2154-2


Accession
MI0010944
Description
Schmidtea mediterranea sme-mir-2154-2 precursor miRNA
Gene family
MIPF0000781; mir-2154


Sequence

gagugauuauuagaauuUCAGCUGUACAAUUGGCAUUGUGUaugauaaaugaauacauuaacACAAGUCUUUGUAUAGCUUAUauuuuuuaucacuaa
.((((((....(((((...((((((((((..(((.((((((.((((..........))))))))))))).))))))))))...)))))..))))))..

Structure
-g      uauu     uUC          UU   A      a    aaau 
  agugau    agaau   AGCUGUACAA  GGC UUGUGU ugau    g
  ||||||    |||||   ||||||||||  ||| |||||| ||||     
  ucacua    uuuua   UCGAUAUGUU  CUG AACAca auua    a
aa      --uu     UAU          -U   -      -    caua 


Annotation confidence Not enough data
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Genome context
Contig21857: 11143-11240 [+]

Database links

Mature sme-miR-2154-5p

Accession MIMAT0011244
Description Schmidtea mediterranea sme-miR-2154-5p mature miRNA
Sequence 18 - UCAGCUGUACAAUUGGCAUUGUGU - 41
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-2154-3p

Accession MIMAT0011412
Description Schmidtea mediterranea sme-miR-2154-3p mature miRNA
Sequence 63 - ACAAGUCUUUGUAUAGCUUAU - 83
Evidence experimental
Illumina [1-2], 454 [2]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491