Stem-loop sme-mir-2154-2

Accession

MI0010944

Description

Schmidtea mediterranea sme-mir-2154-2 precursor miRNA

Sequence

gagugauuauuagaauuUCAGCUGUACAAUUGGCAUUGUGUaugauaaaugaauacauuaacACAAGUCUUUGUAUAGCUUAUauuuuuuaucacuaa
.((((((....(((((...((((((((((..(((.((((((.((((..........))))))))))))).))))))))))...)))))..))))))..

Structure

-g      uauu     uUC          UU   A      a    aaau 
  agugau    agaau   AGCUGUACAA  GGC UUGUGU ugau    g
  ||||||    |||||   ||||||||||  ||| |||||| ||||     
  ucacua    uuuua   UCGAUAUGUU  CUG AACAca auua    a
aa      --uu     UAU          -U   -      -    caua 

Annotation confidence Not enough data

Genome context

Contig21857: 11143-11240 [+]

Mature sme-miR-2154-5p

• Accession: MIMAT0011244
• Description: Schmidtea mediterranea sme-miR-2154-5p mature miRNA
• Sequence: 18 - UCAGCUGUACAAUUGGCAUUGUGU - 41
• Evidence: experimental ; Illumina [1-2], 454 [2]

Mature sme-miR-2154-3p

• Accession: MIMAT0011412
• Description: Schmidtea mediterranea sme-miR-2154-3p mature miRNA
• Sequence: 63 - ACAAGUCUUUGUAUAGCUUAU - 83
• Evidence: experimental ; Illumina [1-2], 454 [2]

References

1. PubMed ID: 19564616
   High-resolution profiling and discovery of planarian small RNAs
   "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
   "Proc Natl Acad Sci U S A (2009) 106:11546-11551


2. PubMed ID: 19553344
   Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
   "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
   "RNA (2009) 15:1483-1491