miRBase entry: sme-mir-2160-2

Stem-loop sme-mir-2160-2


Accession
MI0010948
Description
Schmidtea mediterranea sme-mir-2160-2 precursor miRNA
Gene family
MIPF0000769; mir-2160

Literature search
1 open access papers mention sme-mir-2160-2
(3 sentences)

Sequence

cuuugugauuaaauaUGGCGCUUAUGUGUAGAACCGGuuguacuauauuuuuaaacuGGUUUUUCAUGUAAGAGUCCaaauaguaucacaaaa
.((((((((......((((.((((((((.((((((((((..............)))))))))).)))))))).).)))......)))))))).

Structure
c        uaaaua   - G        U          guacua 
 uuugugau      UGG C CUUAUGUG AGAACCGGuu      u
 ||||||||      ||| | |||||||| ||||||||||       
 aaacacua      aCC G GAAUGUAC UUUUGGucaa      a
a        ugauaa   U A        U          auuuuu 


Annotation confidence Not enough data
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Genome context
Contig31371: 1017-1109 [+]

Database links

Mature sme-miR-2160-5p

Accession MIMAT0011254
Description Schmidtea mediterranea sme-miR-2160-5p mature miRNA
Sequence 16 - UGGCGCUUAUGUGUAGAACCGG - 37
Evidence experimental
Illumina [1-2], 454 [2]

Mature sme-miR-2160-2-3p

Accession MIMAT0013776
Description Schmidtea mediterranea sme-miR-2160-2-3p mature miRNA
Sequence 58 - GGUUUUUCAUGUAAGAGUCC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  2. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491