Stem-loop sequence sme-mir-2200

Accession

MI0010951 (change log)

Description

Schmidtea mediterranea miR-2200 stem-loop

Stem-loop

   aa    g        u   ga  -   auua         auu 
5'   uuuu auacaguu gaa  cg auu    uugauuauu   g
     |||| |||||||| |||  || |||    |||||||||    
3'   aaaa uaugucga cuu  gc uaa    aauuaguag   u
   ua    a        -   aa  c   --aa         agu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (WUSTL3.1): Contig1580: 76060-76143 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0010951

Mature sequence sme-miR-2200-5p

• Accession: MIMAT0011421
• Previous IDs: sme-miR-2200
• Sequence: 16 - ugaagacgauuauuauugauuauu - 39
• Evidence: experimental; Illumina [1]

Mature sequence sme-miR-2200-3p

• Accession: MIMAT0011422
• Previous IDs: sme-miR-2200*
• Sequence: 55 - aaaaaauccgaauucagcugu - 75
• Evidence: experimental; Illumina [1]

References

1. PMID:19553344 "Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea" Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR RNA. 15:1483-1491(2009).