miRBase entry: sme-mir-2200

Stem-loop sme-mir-2200


Accession
MI0010951
Description
Schmidtea mediterranea sme-mir-2200 precursor miRNA


Sequence

aauuuugauacaguuUGAAGACGAUUAUUAUUGAUUAUUauuguugagaugauuAAAAAAUCCGAAUUCAGCUGUauaaaaaau
..((((.((((((((.(((..(((((....(((((((((........)))))))))..))).))..))))))))))).))))..

Structure
aa    g        U   GA  -   AUUA         auu 
  uuuu auacaguu GAA  CG AUU    UUGAUUAUU   g
  |||| |||||||| |||  || |||    |||||||||    
  aaaa uaUGUCGA CUU  GC UAA    AAuuaguag   u
ua    a        -   AA  C   --AA         agu 


Annotation confidence Not enough data
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Genome context
Contig1580: 76060-76143 [+]

Database links

Mature sme-miR-2200-5p

Accession MIMAT0011421
Description Schmidtea mediterranea sme-miR-2200-5p mature miRNA
Sequence 16 - UGAAGACGAUUAUUAUUGAUUAUU - 39
Evidence experimental
Illumina [1]

Mature sme-miR-2200-3p

Accession MIMAT0011422
Description Schmidtea mediterranea sme-miR-2200-3p mature miRNA
Sequence 55 - AAAAAAUCCGAAUUCAGCUGU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491