miRBase entry: sme-mir-2201

Stem-loop sme-mir-2201


Accession
MI0010952
Description
Schmidtea mediterranea sme-mir-2201 precursor miRNA


Sequence

caugaugcugcucaAGUUACUGAAGAAGCUGAUGCUGacaaagaaguauUAUCUGAAGAAGCUGGAGCAUCcgaauagcuuuuuaau
...((((((.(...((((.((..(((...(((((((........))))))))))..)).))))).))))))................

Structure
-------------cau      g uca    A  GA   AGC       Gac 
                gaugcu c   AGUU CU  AGA   UGAUGCU   a
                |||||| |   |||| ||  |||   |||||||    
                CUACGA G   UCGA GA  UCU   AUuauga   a
uaauuuuucgauaagc      G ---    A  AG   ---       aga 


Annotation confidence Not enough data
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Genome context
Contig3745: 19380-19466 [-]

Database links

Mature sme-miR-2201-5p

Accession MIMAT0011423
Description Schmidtea mediterranea sme-miR-2201-5p mature miRNA
Sequence 15 - AGUUACUGAAGAAGCUGAUGCUG - 37
Evidence experimental
Illumina [1]

Mature sme-miR-2201-3p

Accession MIMAT0011424
Description Schmidtea mediterranea sme-miR-2201-3p mature miRNA
Sequence 50 - UAUCUGAAGAAGCUGGAGCAUC - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491