miRBase entry: sme-bantam-c-2

Stem-loop sme-bantam-c-2


Accession
MI0010953
Description
Schmidtea mediterranea sme-bantam-c-2 precursor miRNA
Gene family
MIPF0000153; bantam

Literature search
2 open access papers mention sme-bantam-c-2
(2 sentences)

Sequence

aguuuaAAGGCUUUCAUUAUGAUUUUAAaauguuauuuUGAGAUCAUUAUGAAAGCUUUUuacug
(((..((((((((((((.(((((((((((((...))))))))))))).)))))))))))).))).

Structure
-   uu            U             g 
 agu  aAAGGCUUUCAU AUGAUUUUAAaau  
 |||  |||||||||||| ||||||||||||| u
 uca  UUUUCGAAAGUA UACUAGAGUuuua  
g   -u            U             u 


Annotation confidence Not enough data
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Genome context
Contig483: 150256-150320 [+]

Database links

Mature sme-bantam-c-5p

Accession MIMAT0012086
Description Schmidtea mediterranea sme-bantam-c-5p mature miRNA
Sequence 7 - AAGGCUUUCAUUAUGAUUUUAA - 28
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-bantam-c-3p

Accession MIMAT0003951
Description Schmidtea mediterranea sme-bantam-c-3p mature miRNA
Sequence 39 - UGAGAUCAUUAUGAAAGCUUUU - 60
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491