Stem-loop cel-mir-2208a

Accession

MI0010956

Description

Caenorhabditis elegans cel-mir-2208a precursor miRNA

Gene family

MIPF0000772; mir-2208

Sequence

35 reads, 0 reads per million, 7 experiments

AAGUGUACCCGAAUCUGAUAUCCuaucaucugaaaaaggAUGCAGUUUCUGGUAUACUUCA
(((((((((.(((.(((.((((((.((....))...))))))))).))).)))))))))..

Structure

--         C   U   A      --a  a 
  AAGUGUACC GAA CUG UAUCCu   uc u
  ||||||||| ||| ||| ||||||   ||  
  UUCAUAUGG CUU GAC GUAgga   ag c
AC         U   U   -      aaa  u 

Annotation confidence Not enough data

Genome context

chrIV: 1021772-1021832 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cel-mir-2208a

Mature cel-miR-2208a-5p

• Accession: MIMAT0011427
• Description: Caenorhabditis elegans cel-miR-2208a-5p mature miRNA
• Sequence: 1 - AAGUGUACCCGAAUCUGAUAUCC - 23
• Evidence: experimental ; Illumina [1]

Mature cel-miR-2208a-3p

• Accession: MIMAT0011428
• Description: Caenorhabditis elegans cel-miR-2208a-3p mature miRNA
• Sequence: 40 - AUGCAGUUUCUGGUAUACUUCA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54