miRBase entry: cel-mir-2213

Stem-loop cel-mir-2213


Accession
MI0010963
Description
Caenorhabditis elegans cel-mir-2213 precursor miRNA


Sequence

81 reads, 8 reads per million, 14 experiments
UGGCGGACUCUUCACAGUUUGAccucggagaucAAGCUGUAAGAGGACUGCCUAA
.(((((.(((((.(((((((((.((...)).))))))))))))))..)))))...

Structure
--U     -A     C         c  c 
   GGCGG  CUCUU ACAGUUUGA cu  
   |||||  ||||| ||||||||| || g
   CCGUC  GAGAA UGUCGAAcu ga  
AAU     AG     -         a  g 


Annotation confidence Not enough data
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Genome context
chrIII: 6968870-6968924 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cel-mir-2213
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-2213-5p

Accession MIMAT0011441
Description Caenorhabditis elegans cel-miR-2213-5p mature miRNA
Sequence 1 - UGGCGGACUCUUCACAGUUUGA - 22
Evidence experimental
Illumina [1]

Mature cel-miR-2213-3p

Accession MIMAT0011442
Description Caenorhabditis elegans cel-miR-2213-3p mature miRNA
Sequence 34 - AAGCUGUAAGAGGACUGCCUAA - 55
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54