Stem-loop cbr-mir-35c-1

Accession

MI0010978

Description

Caenorhabditis briggsae cbr-mir-35c-1 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

gaaguugauagucuggaucggaccugcgucaguuuuuaucacugugauauuccaagcauaacgguuaUCACCGGGUGAAAAUUGGUACagguccgauccauucgaacgacuuca
(((((((...(..(((((((((((((..((((((((((((.(.((((((..((.........)).)))))).)))))))))))))..)))))))))))))..)...))))))).

Structure

-       aua uc             cg            a u      uu  aag 
 gaaguug   g  uggaucggaccug  ucaguuuuuauc c gugaua  cc   c
 |||||||   |  |||||||||||||  |||||||||||| | ||||||  ||   a
 cuucagc   c  accuagccuggaC  GGUUAAAAGUGG G CACUau  gg   u
a       aag uu             AU            - C      -u  caa 

Annotation confidence Not enough data

Genome context

chrX: 15370826-15370939 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35c-1

Mature cbr-miR-35c

• Accession: MIMAT0011467
• Description: Caenorhabditis briggsae cbr-miR-35c mature miRNA
• Sequence: 68 - UCACCGGGUGAAAAUUGGUAC - 88
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074