miRBase entry: cbr-mir-35e

Stem-loop cbr-mir-35e


Accession
MI0010979
Description
Caenorhabditis briggsae cbr-mir-35e precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

uaaucuuugagguccgagucggaccugcccugauucuugcugcagugauauuucgaacggcuagauuaUCACCGGGUGACAAUUAGGACagguccgaccccuagugacccggauugc
((((((..(.(((((..((((((((((.(((((((.(((((...((((((..((.........)).))))))..))))).))))))).)))))))))).....).))))))))))).

Structure
-      uu a    - ---ga          c       c     gca      uu  gaa 
 uaaucu  g gguc c     gucggaccug ccugauu uugcu   gugaua  uc   c
 ||||||  | |||| |     |||||||||| ||||||| |||||   ||||||  ||   g
 guuagg  c ccag g     cagccuggaC GGAUUAA AGUGG   CACUau  ag   g
c      -- -    u auccc          A       C     -GC      -u  auc 


Annotation confidence Not enough data
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Genome context
chrX: 15371263-15371379 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35e

Accession MIMAT0011468
Description Caenorhabditis briggsae cbr-miR-35e mature miRNA
Sequence 69 - UCACCGGGUGACAAUUAGGAC - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074