miRBase entry: cbr-mir-35c-2

Stem-loop cbr-mir-35c-2


Accession
MI0010980
Description
Caenorhabditis briggsae cbr-mir-35c-2 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

gacucgguccugcgccacuuuccaccgcggugauauuccaagcaaaacgguuaUCACCGGGUGAAAAUUGGUACagguccgaucc
((.((((.((((.((((.(((.((((.((((((((..((.........)).)))))))))))).))).)))).)))).)))))).

Structure
-  c    u    c    c   c    g        uu  aag 
 ga ucgg ccug gcca uuu cacc cggugaua  cc   c
 || |||| |||| |||| ||| |||| ||||||||  ||   a
 cu agcc ggaC UGGU AAA GUGG GCCACUau  gg   a
c  -    u    A    U   A    -        -u  caa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 15375003-15375087 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35c

Accession MIMAT0011467
Description Caenorhabditis briggsae cbr-miR-35c mature miRNA
Sequence 54 - UCACCGGGUGAAAAUUGGUAC - 74
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074