miRBase entry: cbr-mir-35d

Stem-loop cbr-mir-35d


Accession
MI0010981
Description
Caenorhabditis briggsae cbr-mir-35d precursor miRNA
Gene family
MIPF0000302; mir-35


Sequence

cccaguuccggacacuCGCAGGUUUUUGCUUCGGUGAUauucgaagagccguuaUCACCGGGUGAAAAUUUGCAAGuguccgguaacugg
.(((((((((((((((.(((((((((((((.((((((((..((......)).))))))))))))))))))))).))))))))).))))))

Structure
c      -         C             U        uu  aa 
 ccaguu ccggacacu GCAGGUUUUUGCU CGGUGAUa  cg  g
 |||||| ||||||||| ||||||||||||| ||||||||  ||   
 ggucaa ggccuguGA CGUUUAAAAGUGG GCCACUau  gc  a
-      u         A             -        -u  cg 


Annotation confidence Not enough data
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Genome context
chrII: 8378172-8378261 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from cbr-mir-35d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35d-5p

Accession MIMAT0011469
Description Caenorhabditis briggsae cbr-miR-35d-5p mature miRNA
Sequence 17 - CGCAGGUUUUUGCUUCGGUGAU - 38
Evidence experimental
454 [1]

Mature cbr-miR-35d-3p

Accession MIMAT0011470
Description Caenorhabditis briggsae cbr-miR-35d-3p mature miRNA
Sequence 55 - UCACCGGGUGAAAAUUUGCAAG - 76
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074