miRBase entry: cbr-mir-90b

Stem-loop cbr-mir-90b


Accession
MI0010982
Description
Caenorhabditis briggsae cbr-mir-90b precursor miRNA
Gene family
MIPF0000221; mir-90


Sequence

agauccugcagcaccauuucaagCGGCCUUCAACGACUAUAUCAACcgaauccaaauucgcgaguUGAUAUGUUGUUUUGAAUGUCACUugagguuuuugcuuuuucggauuu
.(((((...((((..((((((((.(((.(((((((((.(((((((((((((....)))))...)))))))))))))..)))).))).))))))))...)))).....))))).

Structure
a     --ugc    -cc        C   C    --     U        ---     c 
 gaucc     agca   auuucaag GGC UUCA  ACGAC AUAUCAAC   cgaau c
 |||||     ||||   |||||||| ||| ||||  ||||| ||||||||   |||||  
 uuagg     ucgu   uggaguUC CUG AAGU  UGUUG UAUAGUug   gcuua a
u     cuuuu    uuu        A   U    UU     -        agc     a 


Annotation confidence Not enough data
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Genome context
chrIII: 14456967-14457079 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-90b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-90b-5p

Accession MIMAT0011471
Description Caenorhabditis briggsae cbr-miR-90b-5p mature miRNA
Sequence 24 - CGGCCUUCAACGACUAUAUCAAC - 46
Evidence experimental
454 [1]

Mature cbr-miR-90b-3p

Accession MIMAT0011472
Description Caenorhabditis briggsae cbr-miR-90b-3p mature miRNA
Sequence 66 - UGAUAUGUUGUUUUGAAUGUCACU - 89
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074