miRBase entry: cbr-mir-54a

Stem-loop cbr-mir-54a


Accession
MI0010985
Description
Caenorhabditis briggsae cbr-mir-54a precursor miRNA
Gene family
MIPF0000874; mir-54


Sequence

caggacgucuaagccgauccuuggcUGGGAUAUGAGCAAACGUGUACacgauacuuauucccugUACCCGUAUUCUCAUAUCUGAGCcaaggaucgucgcaaaaggcggugcuuccug
((((((((((..((((((((((((((.(((((((((...(((.(((((.((.......))..))))).)))...))))))))).))))))))))))..))...))))).....)))))

Structure
     -----     -aa  --            G         CAA   U     -c  ua 
cagga     cgucu   gc  cgauccuuggcU GGAUAUGAG   ACG GUACa  ga  c
|||||     |||||   ||  |||||||||||| |||||||||   ||| |||||  ||  u
guccu     gcgga   cg  gcuaggaacCGA UCUAUACUC   UGC CAUgu  cu  u
     ucgug     aaa  cu            G         UUA   C     cc  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 16963746-16963863 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from cbr-mir-54a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-54a-5p

Accession MIMAT0011477
Description Caenorhabditis briggsae cbr-miR-54a-5p mature miRNA
Sequence 26 - UGGGAUAUGAGCAAACGUGUAC - 47
Evidence experimental
454 [1]

Mature cbr-miR-54a-3p

Accession MIMAT0011478
Description Caenorhabditis briggsae cbr-miR-54a-3p mature miRNA
Sequence 65 - UACCCGUAUUCUCAUAUCUGAGC - 87
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074