miRBase entry: cbr-mir-35b-1

Stem-loop cbr-mir-35b-1


Accession
MI0010989
Description
Caenorhabditis briggsae cbr-mir-35b-1 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

uuggaucggaccucugcugguuucugccgcagugauauuccaacguagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccaga
(((((((((((((((((((((((.((((.(.((((((..(((......))).)))))).))))).))))))))))))))))))))))).

Structure
-                       c    g a      uu   ac 
 uuggaucggaccucugcugguuu ugcc c gugaua  cca  g
 ||||||||||||||||||||||| |||| | ||||||  |||   
 gaccuagccugGAGAUGGUCAAA GUGG G CACUau  ggu  u
a                       A    - C      -u   ga 


Annotation confidence Not enough data
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Genome context
chrX: 15371137-15371225 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35b

Accession MIMAT0011483
Description Caenorhabditis briggsae cbr-miR-35b mature miRNA
Sequence 55 - UCACCGGGUGAAAACUGGUAGAG - 77
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074