Stem-loop cbr-mir-35b-4

Accession

MI0010992

Description

Caenorhabditis briggsae cbr-mir-35b-4 precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

auggucugggucggaccuuugccaauuuucuccgcggugauacuccaaugcgacgauuaUCACCGGGUGAAAACUGGUAGAGguccgagccagucagaccauc
((((((((((((((((((((((((.(((((.((.((((((((.((.........)).)))))))))).))))).)))))))))))))).))...)))))))).

Structure

-        ---  -              a     u  g        c  caa 
 auggucug   gg ucggaccuuugcca uuuuc cc cggugaua uc   u
 ||||||||   || |||||||||||||| ||||| || |||||||| ||   g
 uaccagac   cc agccugGAGAUGGU AAAAG GG GCCACUau ag   c
c        uga  g              C     U  -        u  cag 

Annotation confidence Not enough data

Genome context

chrX: 15372337-15372439 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from cbr-mir-35b-4

Mature cbr-miR-35b

• Accession: MIMAT0011483
• Description: Caenorhabditis briggsae cbr-miR-35b mature miRNA
• Sequence: 60 - UCACCGGGUGAAAACUGGUAGAG - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074