Stem-loop sequence cbr-mir-35b-5

Accession

MI0010993

Description

Caenorhabditis briggsae miR-35b-5 stem-loop

Gene family

MIPF0000096; mir-36

Stem-loop

-    a c  a   ----             cg ug c    u  a        cu   aa 
 auga g gu guu    ugggucggaccuc  c  g uuuu cc cggugaua  cca  g
 |||| | || |||    |||||||||||||  |  | |||| || ||||||||  |||  c
 uacu c ca cag    accuagccuggag  g  c aaag gg gccacuau  ggu  a
u    a -  c   gcuc             au gu a    u  -        -u   ga 

Deep sequencing

142 reads, 1 experiments

Genome context

• Coordinates (WS200): chrX: 15335266-15335382 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from cbr-mir-35b-5

• cbr-mir-35c-1: chrX: 15333569-15333682 [+]
• cbr-mir-35b-1: chrX: 15333880-15333968 [+]
• cbr-mir-35e: chrX: 15334006-15334122 [+]
• cbr-mir-35b-2: chrX: 15334766-15334868 [+]
• cbr-mir-35b-3: chrX: 15334941-15335040 [+]
• cbr-mir-35b-4: chrX: 15335080-15335182 [+]
• cbr-mir-35b-5: chrX: 15335266-15335382 [+]
• cbr-mir-35b-6: chrX: 15335427-15335519 [+]
• cbr-mir-35b-7: chrX: 15335590-15335689 [+]
• cbr-mir-35b-8: chrX: 15335737-15335843 [+]
• cbr-mir-35b-9: chrX: 15335905-15336004 [+]
• cbr-mir-35b-10: chrX: 15336052-15336158 [+]
• cbr-mir-35b-11: chrX: 15336203-15336311 [+]
• cbr-mir-35b-12: chrX: 15336370-15336473 [+]
• cbr-mir-35b-13: chrX: 15336518-15336605 [+]
• cbr-mir-35c-2: chrX: 15337746-15337830 [+]

Mature sequence cbr-miR-35b

• Accession: MIMAT0011483
• Sequence: 68 - ucaccgggugaaaacugguagag - 90
• Deep sequencing: 1704 reads, 1 experiments
• Evidence: experimental; 454 [1]

References

1. PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).