miRBase entry: cbr-mir-35b-5

Stem-loop cbr-mir-35b-5


Accession
MI0010993
Description
Caenorhabditis briggsae cbr-mir-35b-5 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

augaagcguaguuugggucggaccuccgcuggcuuuuuccacggugauacuccaaagcaagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccacucggaccaccaucauu
((((.(.((.((((((((((((((((.(((((.((((.((.((((((((..(((.......))).)))))))))).)))).))))).)))))))))))))....))).))).)))).

Structure
-    a c  a   ----             c     c    u  a        cu   aa 
 auga g gu guu    ugggucggaccuc gcugg uuuu cc cggugaua  cca  g
 |||| | || |||    ||||||||||||| ||||| |||| || ||||||||  |||  c
 uacu c ca cag    accuagccugGAG UGGUC AAAG GG GCCACUau  ggu  a
u    a -  c   gcuc             A     A    U  -        -u   ga 


Annotation confidence Not enough data
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Genome context
chrX: 15372523-15372639 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35b-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35b

Accession MIMAT0011483
Description Caenorhabditis briggsae cbr-miR-35b mature miRNA
Sequence 68 - UCACCGGGUGAAAACUGGUAGAG - 90
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074