miRBase entry: cbr-mir-35b-8

Stem-loop cbr-mir-35b-8


Accession
MI0010996
Description
Caenorhabditis briggsae cbr-mir-35b-8 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

cgaaggucuggaucggaccuccgcugguuuuucccgcggugauauuccgaagcaagugguuaUCACCGGGUGAAAACUGGUAGAGguccgauccagucguaccaucg
(((.(((((((((((((((((.((((((((((.((.((((((((..(((.......))).)))))))))).)))))))))).))))))))))))))....))).)))

Structure
   a   ----              c          c  g        uu   aa 
cga ggu    cuggaucggaccuc gcugguuuuu cc cggugaua  ccg  g
||| |||    |||||||||||||| |||||||||| || ||||||||  |||  c
gcu cca    gaccuagccugGAG UGGUCAAAAG GG GCCACUau  ggu  a
   a   ugcu              A          U  -        -u   ga 


Annotation confidence Not enough data
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Genome context
chrX: 15372994-15373100 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35b-8
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35b

Accession MIMAT0011483
Description Caenorhabditis briggsae cbr-miR-35b mature miRNA
Sequence 63 - UCACCGGGUGAAAACUGGUAGAG - 85
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074