Stem-loop sequence cbr-mir-35b-9

Accession MI0010997
Description Caenorhabditis briggsae miR-35b-9 stem-loop
Gene family MIPF0000096; mir-36
Stem-loop
-       ----          cg  gu     u  g        - uc aa 
 ggucugg    gucggaccuc  cu  uuuuc cc cggugaua c  c  a
 |||||||    ||||||||||  ||  ||||| || |||||||| |  |  g
 ccaggcu    uagccuggag  gg  aaaag gg gccacuau g  g  a
a       gacu          au  uc     u  -        u cu aa 
Get sequence
Deep sequencing
reads, experiments
Genome context
Coordinates (WS200) Overlapping transcripts
chrX: 15335905-15336004 [+]
intergenic
Clustered miRNAs
< 10kb from cbr-mir-35b-9
cbr-mir-35c-1 chrX: 15333569-15333682 [+]
cbr-mir-35b-1 chrX: 15333880-15333968 [+]
cbr-mir-35e chrX: 15334006-15334122 [+]
cbr-mir-35b-2 chrX: 15334766-15334868 [+]
cbr-mir-35b-3 chrX: 15334941-15335040 [+]
cbr-mir-35b-4 chrX: 15335080-15335182 [+]
cbr-mir-35b-5 chrX: 15335266-15335382 [+]
cbr-mir-35b-6 chrX: 15335427-15335519 [+]
cbr-mir-35b-7 chrX: 15335590-15335689 [+]
cbr-mir-35b-8 chrX: 15335737-15335843 [+]
cbr-mir-35b-9 chrX: 15335905-15336004 [+]
cbr-mir-35b-10 chrX: 15336052-15336158 [+]
cbr-mir-35b-11 chrX: 15336203-15336311 [+]
cbr-mir-35b-12 chrX: 15336370-15336473 [+]
cbr-mir-35b-13 chrX: 15336518-15336605 [+]
cbr-mir-35c-2 chrX: 15337746-15337830 [+]

Mature sequence cbr-miR-35b

Accession MIMAT0011483
Sequence

59 - 

ucaccgggugaaaacugguagag

 - 81

Get sequence
Evidence experimental; 454 [1]

References

1
PMID:19755563 "Repertoire and evolution of miRNA genes in four divergent nematode species" de Wit E, Linsen SE, Cuppen E, Berezikov E Genome Res. 19:2064-2074(2009).