miRBase entry: cbr-mir-35b-12

Stem-loop cbr-mir-35b-12


Accession
MI0011000
Description
Caenorhabditis briggsae cbr-mir-35b-12 precursor miRNA
Gene family
MIPF0000096; mir-36


Sequence

aauggucugggucggaccuccgcuguuuuucuccgcggugauacuccaaagaaagucguuaUCACCGGGUGAAAACUGGUAGAGguccgauucagucggaccau
.(((((((((((((((((((.((((.(((((.((.((((((((................)))))))))).))))).)))).))))))))))....)))))))))

Structure
a         ----          c    u     u  g        cuccaaa 
 auggucugg    gucggaccuc gcug uuuuc cc cggugaua       g
 |||||||||    |||||||||| |||| ||||| || ||||||||        
 uaccaggcu    uagccugGAG UGGU AAAAG GG GCCACUau       a
-         gacu          A    C     U  -        ugcugaa 


Annotation confidence Not enough data
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Genome context
chrX: 15373627-15373730 [+]
Clustered miRNAs
20 other miRNAs are < 10 kb from cbr-mir-35b-12
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-35b

Accession MIMAT0011483
Description Caenorhabditis briggsae cbr-miR-35b mature miRNA
Sequence 62 - UCACCGGGUGAAAACUGGUAGAG - 84
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074