Stem-loop cbr-mir-65

Accession

MI0011002

Description

Caenorhabditis briggsae cbr-mir-65 precursor miRNA

Sequence

agacccucaccaauCAUGACACUGAAGCGGGAAUGGaagcguagucagauugcaauuCCUACCGGGUUCAGUGUCAUACUuggugcggaugagucug
((((((.((((((..(((((((((((.(.((...((((..(((((...)))))..))))..)).).)))))))))))..)))))).))....)))).

Structure

-    ----  u      uC           G G  AAU    gc     c 
 agac    cc caccaa  AUGACACUGAA C GG   GGaa  guagu  
 ||||    || ||||||  ||||||||||| | ||   ||||  ||||| a
 ucug    gg gugguU  UACUGUGACUU G CC   CCuu  cguua  
g    agua  c      CA           G G  -AU    aa     g 

Annotation confidence Not enough data

Genome context

chrIII: 868808-868904 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-65

Mature cbr-miR-65-5p

• Accession: MIMAT0011484
• Description: Caenorhabditis briggsae cbr-miR-65-5p mature miRNA
• Sequence: 15 - CAUGACACUGAAGCGGGAAUGG - 36
• Evidence: experimental ; 454 [1]

Mature cbr-miR-65-3p

• Accession: MIMAT0011485
• Description: Caenorhabditis briggsae cbr-miR-65-3p mature miRNA
• Sequence: 58 - CCUACCGGGUUCAGUGUCAUACU - 80
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074