miRBase entry: cbr-mir-2227

Stem-loop cbr-mir-2227


Accession
MI0011005
Description
Caenorhabditis briggsae cbr-mir-2227 precursor miRNA


Sequence

uucuucgccacgugucuccaaugcucuucaccucuauuuccacuuccacccaaguaauuugaagUGGCAGUGUAAGUAGCUGGUGaagaaauuguuuugagacgaagag
.(((((.......(((((((((..((((((((.((((((.((((.((((.(((.....)))..)))).)))).))))))..)))))))).))))....)))))))))).

Structure
u     gccacgu     ----    gc        -u      c    u    -c   g 
 ucuuc       gucuc    caau  ucuucacc  cuauuu cacu ccac  caa u
 |||||       |||||    ||||  ||||||||  |||||| |||| ||||  ||| a
 agaag       cagag    guua  agaaGUGG  GAUGAA GUGA GGUg  guu a
g     -------     uuuu    -a        UC      U    C    aa   u 


Annotation confidence Not enough data
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Genome context
chrI: 6948887-6948995 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cbr-mir-2227
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cbr-miR-2227

Accession MIMAT0011488
Description Caenorhabditis briggsae cbr-miR-2227 mature miRNA
Sequence 65 - UGGCAGUGUAAGUAGCUGGUG - 85
Evidence experimental
454 [1]

References

  1. PubMed ID: 19755563
    Repertoire and evolution of miRNA genes in four divergent nematode species
    "de Wit E, Linsen SE, Cuppen E, Berezikov E"
    "Genome Res (2009) 19:2064-2074